CMS Pixel Detector Miscellaneous
Phase 1 Phase 2
Layer 1 Replacement Layers 2-4
  Layer 1 Replacement Elog  Not logged in ELOG logo
Message ID: 275     Entry time: Tue May 26 23:00:50 2020
Author: Dinko Ferencek 
Category: Other 
Subject: Problem with external disk filling up too quickly 
The external hard disk (LaCie) used to back up the L1 replacement data completely filled up after transferring ~70 GB worth of data even though its capacity is 2 TB. The backup consists of copying all .tar files and the WebOutput/ subfolder from /home/l_tester/L1_DATA/ to /media/l_tester/LaCie/L1_DATA/ The corresponding rsync command is

rsync -avPSh --include="M????_*.tar" --include="WebOutput/***" --exclude="*" /home/l_tester/L1_DATA/ /media/l_tester/LaCie/L1_DATA/

It was discovered that /home/l_tester/L1_DATA/WebOutput/ was by mistake duplicated inside /media/l_tester/LaCie/L1_DATA/WebOutput/ However, this could still not explain the full disk.

The size of the tar files looked fine but /media/l_tester/LaCie/L1_DATA/WebOutput/ was 1.8 TB in size while /home/l_tester/L1_DATA/WebOutput/ was taking up only 50 GB and apart from the above-mentioned duplication, there was no other obvious duplication.

It turned out the file system on the external hard disk had a block size of 512 KB which is unusually large. This is typically set to 4 KB. In practice this meant that every file (and even folder), no matter how small, always occupied at least 512 KB on the disk. For example, I saw the following

l_tester@pc11366:~$ cd /media/l_tester/LaCie/
l_tester@pc11366:/media/l_tester/LaCie$ du -hs Warranty.pdf
512K Warranty.pdf
l_tester@pc11366:/media/l_tester/LaCie$ du -hs --apparent-size Warranty.pdf
94K Warranty.pdf

And in a case like ours, where there are a lot of subfolders and files, many of whom are small, a lot of disk space is effectively wasted.

The file system used on the external disk was exFAT. According to this page, the default block size (in the page they call it the cluster size) for the exFAT file system scales with the drive size and this is the likely reason why the size of 512 KB was used (however, 512 KB is still larger than the largest block size used by default). The main partition on the external disk was finally reformatted as follows

sudo mkfs.exfat -n LaCie -s 8 /dev/sdd2

which set the block size to 4 KB.
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